The Names of the Eight Gene-Centric Non-Coding Masks

The mask names noncoding_filter and define_regions_noncoding accept, in STAARpipeline's order: the seven regulatory masks of protein-coding genes, then the ncRNA mask.

noncoding_masks()

Value

A character vector of eight names.

See also

noncoding_filter, define_regions_noncoding

Examples

noncoding_masks()
#> [1] "upstream"      "downstream"    "UTR"           "promoter_CAGE"
#> [5] "promoter_DHS"  "enhancer_CAGE" "enhancer_DHS"  "ncRNA"