Package index • GLOWpipeline

All functions
`aggregate_coding_results()`	Assemble Gene-Centric Coding-Mask Results Genome-Wide
`aggregate_scan_results()`	Aggregate Per-Chunk Window-Scan Results Genome-Wide
`build_lambda_table_md()`	Build the Per-Category Lambda_GC Markdown Table
`build_scan_regions()`	Build the Regions Table and Filter(s) for One Scan Unit
`check_scan_completeness()`	Check Whether a Genome Scan Is Complete
`define_genome_chunks()`	Split a Chromosome Set into Window-Scan Chunks
`ensure_shared_output_dir()`	Make a Run's Output Dir a Shared-Backed Symlink (Best-Effort, Portable)
`gc_calibration_fields()`	Resolve GLOW Genomic-Control Calibration Report Fields
`glow_output_policy()` `print(<glow_output_policy>)`	Construct a GLOW Window-Scan Output Policy
`glow_scan_chunk()`	Scan One Genomic Chunk's Sliding Windows with GLOW
`load_config_snapshot()`	Load a Run's Saved Configuration
`load_evidence_for_chrs()`	Load Per-Chromosome Evidence Packets into a Flat Named List
`noncoding_gene_anchor()`	The Gene Anchor That Orders a Gene-Centric Non-Coding Table
`parse_chr_log()`	Parse a Per-Chromosome Run Log
`parse_chunk_log()`	Parse a Per-Chunk Sliding-Window Run Log
`prepare_scan_run()`	Resolve the Shared Preparation Step of a Multi-Region GLOW Scan
`read_all_chr_results()`	Concatenate the Per-Chromosome Result CSVs in Genomic Order
`run_scan_unit()`	Run and Persist One GLOW Scan Unit
`summarize_qq_and_lambdas()`	Summarize QQ Plots and Per-Test Lambda Values
`write_error_drilldowns()`	Write Per-Error Variant Drill-down CSVs

Reference